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Suna Onengut-Gumuscu

Suna Onengut-Gumuscu

Associate Professor, Medicine- Endocrinology and Metabolism

Primary Location
PO Box 800717
Primary Phone Number

Bio & Overview

My research focuses on understanding the genetic causes of complex diseases. The lab is particularly interested in identification of genetic variants that influence the development of type 1 diabetes (T1D). T1D is a complex disorder, which arises from the autoimmune destruction of the insulin secreting b-cells of the pancreas leading to a life-long dependence on exogenous insulin. The increased concordance rates for T1D in monozygotic, as opposed to dizygotic twins as well as the tendency for the disorder to cluster within families suggest that a portion of the risk for T1D is inherited. We use a variety of genomic tools, high throughput oriented technology and analysis methods to reveal the molecular mechanisms underlying genetic risk in T1D. Ultimately identification of the genetic risk factors that play a role in T1D will help us understand the mechanisms that lead to autoimmunity in T1D and assist researchers in devising preventive and therapeutic treatments.

Academic Information

Department
Medicine- Endocrinology and Metabolism
Academic Title
Assistant Professor

Other Appointments

  • Assistant Professor, Public Health Sciences

Other Affiliations

  • Genomic Sciences

Research Interests

Genetics of Type 1 Diabetes Genetics of Complex diseases

Selected Publications

2024

Triolo, T. M., Parikh, H. M., Tosur, M., Ferrat, L. A., You, L., Gottlieb, P. A., . . . Redondo, M. J. (2024). Genetic Associations With C-peptide Levels Before Type 1 Diabetes Diagnosis in At-risk Relatives. JOURNAL OF CLINICAL ENDOCRINOLOGY & METABOLISM. doi:10.1210/clinem/dgae349

Felton, J. L., Redondo, M. J., Oram, R. A., Speake, C., Long, S. A., Onengut-Gumuscu, S., . . . Franks, P. W. (2024). Islet autoantibodies as precision diagnostic tools to characterize heterogeneity in type 1 diabetes: a systematic review. COMMUNICATIONS MEDICINE, 4(1). doi:10.1038/s43856-024-00478-y

2023

Felton, J. L., Griffin, K. J., Oram, R. A., Speake, C., Long, S. A., Onengut-Gumuscu, S., . . . Sims, E. K. (2023). Disease-modifying therapies and features linked to treatment response in type 1 diabetes prevention: a systematic review. COMMUNICATIONS MEDICINE, 3(1). doi:10.1038/s43856-023-00357-y

Tobias, D. K., Merino, J., Ahmad, A., Aiken, C., Benham, J. L., Bodhini, D., . . . Franks, P. W. (2023). Second international consensus report on gaps and opportunities for the clinical translation of precision diabetes medicine. NATURE MEDICINE, 29(10), 2438-2457. doi:10.1038/s41591-023-02502-5

Newman, J. R. B., Long, S. A., Speake, C., Greenbaum, C. J., Cerosaletti, K., Rich, S. S., . . . Concannon, P. (2023). Shifts in isoform usage underlie transcriptional differences in regulatory T cells in type 1 diabetes. COMMUNICATIONS BIOLOGY, 6(1). doi:10.1038/s42003-023-05327-7

Onengut-Gumuscu, S., Webb-Robertson, B. -J. M., Sarkar, S., Manichaikul, A., Hu, X., Frazer-Abel, A., . . . Rich, S. S. (2024). Genetic variants in the complement system and their potential link in the aetiology of type 1 diabetes. DIABETES-METABOLISM RESEARCH AND REVIEWS, 40(1). doi:10.1002/dmrr.3716

Miller, R. G., Mychaleckyj, J. C., Onengut-Gumuscu, S., Feingold, E., Orchard, T. J., & Costacou, T. (2023). DNA methylation and 28-year cardiovascular disease risk in type 1 diabetes: the Epidemiology of Diabetes Complications (EDC) cohort study. CLINICAL EPIGENETICS, 15(1). doi:10.1186/s13148-023-01539-0

Kudtarkar, P., Costanzo, M. C., Sun, Y., Jang, D., Koesterer, R., Mychaleckyj, J. C., . . . Burtt, N. P. (2023). Leveraging type 1 diabetes human genetic and genomic data in the T1D knowledge portal. PLOS BIOLOGY, 21(8). doi:10.1371/journal.pbio.3002233

Dillard, L. J., Rosenow, W. T., Calabrese, G. M., Mesner, L. D., Al-Barghouthi, B. M., Abood, A., . . . Farber, C. R. (2023). Single-Cell Transcriptomics of Bone Marrow Stromal Cells in Diversity Outbred Mice: A Model for Population-Level scRNA-Seq Studies. JOURNAL OF BONE AND MINERAL RESEARCH, 38(9), 1350-1363. doi:10.1002/jbmr.4882

Buckner, T., Johnson, R. K., Vanderlinden, L. A., Carry, P. M., Romero, A., Onengut-Gumuscu, S., . . . Norris, J. M. (2023). An Oxylipin-Related Nutrient Pattern and Risk of Type 1 Diabetes in the Diabetes Autoimmunity Study in the Young (DAISY). NUTRIENTS, 15(4). doi:10.3390/nu15040945

Buckner, T., Johnson, R. K., Vanderlinden, L. A., Carry, P. M., Romero, A., Onengut-Gumuscu, S., . . . Norris, J. M. (2023). Genome-wide analysis of oxylipins and oxylipin profiles in a pediatric population. FRONTIERS IN NUTRITION, 10. doi:10.3389/fnut.2023.1040993

Michalek, D. A., Onengut-Gumuscu, S., Repaske, D. R., & Rich, S. S. (2023). Precision Medicine in Type 1 Diabetes. JOURNAL OF THE INDIAN INSTITUTE OF SCIENCE, 103(1), 335-351. doi:10.1007/s41745-023-00356-x

Miller, R. G., Mychaleckyj, J. C., Onengut-Gumuscu, S., Orchard, T. J., & Costacou, T. (2023). TXNIP DNA methylation is associated with glycemic control over 28 years in type 1 diabetes: findings from the Pittsburgh Epidemiology of Diabetes Complications (EDC) study. BMJ OPEN DIABETES RESEARCH & CARE, 11(1). doi:10.1136/bmjdrc-2022-003068

2022

Turner, A. W., Hu, S. S., Mosquera, J. V., Ma, W. F., Hodonsky, C. J., Wong, D., . . . Miller, C. L. (2022). Single-nucleus chromatin accessibility profiling highlights regulatory mechanisms of coronary artery disease risk (vol 54, pg 804, 2022). NATURE GENETICS, 54(8), 1259. doi:10.1038/s41588-022-01142-8

Redondo, M. J., Gignoux, C. R., Dabelea, D., Hagopian, W. A., Onengut-Gumuscu, S., Oram, R. A., & Rich, S. S. (2022). Type 1 diabetes in diverse ancestries and the use of genetic risk scores. LANCET DIABETES & ENDOCRINOLOGY, 10(8), 597-608. doi:10.1016/S2213-8587(22)00159-0

Turner, A. W., Hu, S. S., Mosquera, J. V., Ma, W. F., Hodonsky, C. J., Wong, D., . . . Miller, C. L. (2022). Single-nucleus chromatin accessibility profiling highlights regulatory mechanisms of coronary artery disease risk. NATURE GENETICS, 54(6), 804-+. doi:10.1038/s41588-022-01069-0

Lucas, C. D., Medina, C. B., Bruton, F. A., Dorward, D. A., Raymond, M. H., Tufan, T., . . . Ravichandran, K. S. (2022). Pannexin 1 drives efficient epithelial repair after tissue injury. SCIENCE IMMUNOLOGY, 7(71). doi:10.1126/sciimmunol.abm4032

Torn, C., Liu, X., Onengut-Gumuscu, S., Counts, K. M., Moreno, J. L., Remedios, C. L., . . . Parikh, H. M. (2022). Telomere length is not a main factor for the development of islet autoimmunity and type 1 diabetes in the TEDDY study. SCIENTIFIC REPORTS, 12(1). doi:10.1038/s41598-022-08058-7

2021

Braenne, I., Onengut-Gumuscu, S., Chen, R., Manichaikul, A. W., Rich, S. S., Chen, W. -M., & Farber, C. R. (2021). Dynamic changes in immune gene co-expression networks predict development of type 1 diabetes. SCIENTIFIC REPORTS, 11(1). doi:10.1038/s41598-021-01840-z

Arandjelovic, S., Perry, J. S. A., Zhou, M., Ceroi, A., Smirnov, I., Walk, S. F., . . . Ravichandran, K. S. (2021). ELMO1 signaling is a promoter of osteoclast function and bone loss. NATURE COMMUNICATIONS, 12(1). doi:10.1038/s41467-021-25239-6

Mychaleckyj, J. C., Valo, E., Ichimura, T., Ahluwalia, T. S., Dina, C., Miller, R. G., . . . Krolewski, A. S. (2021). Association of Coding Variants in Hydroxysteroid 17-beta Dehydrogenase 14 (HSD17B14) with Reduced Progression to End Stage Kidney Disease in Type 1 Diabetes. JOURNAL OF THE AMERICAN SOCIETY OF NEPHROLOGY, 32(10), 2634-2651. doi:10.1681/ASN.2020101457

Robertson, C. C., Inshaw, J. R. J., Onengut-Gumuscu, S., Chen, W. -M., Santa Cruz, D. F., Yang, H., . . . Rich, S. S. (2021). Fine-mapping, trans-ancestral and genomic analyses identify causal variants, cells, genes and drug targets for type 1 diabetes. NATURE GENETICS, 53(7), 962-+. doi:10.1038/s41588-021-00880-5

Al-Barghouthi, B. M., Mesner, L. D., Calabrese, G. M., Brooks, D., Tommasini, S. M., Bouxsein, M. L., . . . Farber, C. R. (2021). Systems genetics in diversity outbred mice inform BMD GWAS and identify determinants of bone strength. NATURE COMMUNICATIONS, 12(1). doi:10.1038/s41467-021-23649-0

Da Mesquita, S., Papadopoulos, Z., Dykstra, T., Brase, L., Farias, F. G., Wall, M., . . . Kipnis, J. (2021). Meningeal lymphatics affect microglia responses and anti-Aβ immunotherapy. NATURE, 593(7858), 255-+. doi:10.1038/s41586-021-03489-0

Olson, T. L., Cheon, H., Xing, J. C., Olson, K. C., Paila, U., Hamele, C. E., . . . Loughran, T. P. J. (2021). Frequent somatic TET2 mutations in chronic NK-LGL leukemia with distinct patterns of cytopenias. BLOOD, 138(8), 662-673. doi:10.1182/blood.2020005831

Miller, R. G., Orchard, T. J., Onengut-Gumuscu, S., Chen, W. -M., Rich, S. S., & Costacou, T. (2021). Heterogeneous long-term trajectories of glycaemic control in type 1 diabetes. DIABETIC MEDICINE, 38(8). doi:10.1111/dme.14545

Bonifacio, E., Weiß, A., Winkler, C., Hippich, M., Rewers, M. J., Toppari, J., . . . TEDDY Study Group. (2021). An Age-Related Exponential Decline in the Risk of Multiple Islet Autoantibody Seroconversion During Childhood.. Diabetes care, dc202122. doi:10.2337/dc20-2122

Miller, R. G., McGurnaghan, S. J., Onengut-Gumuscu, S., Chen, W. -M., Colhoun, H. M., Rich, S. S., . . . Costacou, T. (2021). Insulin resistance-associated genetic variants in type 1 diabetes. JOURNAL OF DIABETES AND ITS COMPLICATIONS, 35(4). doi:10.1016/j.jdiacomp.2020.107842

Tran, P. M. H., Purohit, S., Kim, E., bin Satter, K., Hopkins, D., Waugh, K., . . . She, J. -X. (2021). The 3p21.31 genetic locus promotes progression to type 1 diabetes through the CCR2/CCL2 pathway. JOURNAL OF TRANSLATIONAL AUTOIMMUNITY, 4. doi:10.1016/j.jtauto.2021.100127

2020

Laker, R. C., Altintas, A., Lillard, T. S., Zhang, M., Connelly, J. J., Sabik, O. L., . . . Yan, Z. (2021). Exercise during pregnancy mitigates negative effects of parental obesity on metabolic function in adult mouse offspring. JOURNAL OF APPLIED PHYSIOLOGY, 130(3), 605-616. doi:10.1152/japplphysiol.00641.2020

Onengut-Gumuscu, S., Paila, U., Chen, W. -M., Ratan, A., Zhu, Z., Steck, A. K., . . . Rich, S. S. (2020). Novel genetic risk factors influence progression of islet autoimmunity to type 1 diabetes. SCIENTIFIC REPORTS, 10(1). doi:10.1038/s41598-020-75690-6

Sidore, C., Orru, V., Cocco, E., Steri, M., Inshaw, J. R. J., Pitzalis, M., . . . Zoledziewska, M. (2021). PRF1 mutation alters immune system activation, inflammation, and risk of autoimmunity. MULTIPLE SCLEROSIS JOURNAL, 27(9), 1332-1340. doi:10.1177/1352458520963937

Aherrahrou, R., Guo, L., Nagraj, V. P., Aguhob, A., Hinkle, J., Chen, L., . . . Civelek, M. (2020). Genetic Regulation of Atherosclerosis-Relevant Phenotypes in Human Vascular Smooth Muscle Cells. CIRCULATION RESEARCH, 127(12), 1552-1565. doi:10.1161/CIRCRESAHA.120.317415

Vehik, K., Bonifacio, E., Lernmark, Å., Yu, L., Williams, A., Schatz, D., . . . TEDDY Study Group. (2020). Hierarchical Order of Distinct Autoantibody Spreading and Progression to Type 1 Diabetes in the TEDDY Study.. Diabetes care, 43(9), 2066-2073. doi:10.2337/dc19-2547

Cui, D., Drake, J. C., Wilson, R. J., Shute, R. J., Lewellen, B., Zhang, M., . . . Yan, Z. (2020). A novel voluntary weightlifting model in mice promotes muscle adaptation and insulin sensitivity with simultaneous enhancement of autophagy and mTOR pathway. FASEB JOURNAL, 34(6), 7330-7344. doi:10.1096/fj.201903055R

Li, Q., Parikh, H., Butterworth, M. D., Lernmark, A., Hagopian, W., Rewers, M., . . . Krischer, J. P. (2020). Longitudinal Metabolome-Wide Signals Prior to the Appearance of a First Islet Autoantibody in Children Participating in the TEDDY Study. DIABETES, 69(3), 465-476. doi:10.2337/db19-0756

Wang, T. T., Yang, J., Dighe, S., Schmachtenberg, M. W., Leigh, N. T., Farber, E., . . . Olson, T. L. (2020). Whole Genome Sequencing of Spontaneously Occurring Rat Natural Killer Large Granular Lymphocyte Leukemia Identifies JAK1 Somatic Activating Mutation. CANCERS, 12(1). doi:10.3390/cancers12010126

Liu, X., Vehik, K., Huang, Y., Elding Larsson, H., Toppari, J., Ziegler, A. G., . . . TEDDY Study Group. (2020). Distinct Growth Phases in Early Life Associated With the Risk of Type 1 Diabetes: The TEDDY Study.. Diabetes care, 43(3), 556-562. doi:10.2337/dc19-1670

2019

Perry, J. S. A., Morioka, S., Medina, C. B., Etchegaray, J. I., Barron, B., Raymond, M. H., . . . Ravichandran, K. S. (2019). Interpreting an apoptotic corpse as anti-inflammatory involves a chloride sensing pathway. NATURE CELL BIOLOGY, 21(12), 1532-+. doi:10.1038/s41556-019-0431-1

Fernandez-Castaneda, A., Chappell, M. S., Rosen, D. A., Seki, S. M., Beiter, R. M., Johanson, D. M., . . . Gaultier, A. (2020). The active contribution of OPCs to neuroinflammation is mediated by LRP1. ACTA NEUROPATHOLOGICA, 139(2), 365-382. doi:10.1007/s00401-019-02073-1

Salem, R. M., Todd, J. N., Sandholm, N., Cole, J. B., Chen, W. -M., Andrews, D., . . . Florez, J. C. (2019). Genome-Wide Association Study of Diabetic Kidney Disease Highlights Biology Involved in Glomerular Basement Membrane Collagen. JOURNAL OF THE AMERICAN SOCIETY OF NEPHROLOGY, 30(10), 2000-2016. doi:10.1681/ASN.2019030218

Krischer, J. P., Liu, X., Vehik, K., Akolkar, B., Hagopian, W. A., Rewers, M. J., . . . TEDDY Study Group. (2019). Predicting Islet Cell Autoimmunity and Type 1 Diabetes: An 8-Year TEDDY Study Progress Report.. Diabetes care, 42(6), 1051-1060. doi:10.2337/dc18-2282

Singh, S., Wang, L., Schaff, D. L., Sutcliffe, M. D., Koeppel, A. F., Kim, J., . . . Janes, K. A. (2019). In situ 10-cell RNA sequencing in tissue and tumor biopsy samples. SCIENTIFIC REPORTS, 9. doi:10.1038/s41598-019-41235-9

Jacobsen, L. M., Larsson, H. E., Tamura, R. N., Vehik, K., Clasen, J., Sosenko, J., . . . Triplett, E. (2019). Predicting progression to type 1 diabetes from ages 3 to 6 in islet autoantibody positive TEDDY children. PEDIATRIC DIABETES, 20(3), 263-270. doi:10.1111/pedi.12812

Onengut-Gumuscu, S., Chen, W. -M., Robertson, C. C., Bonnie, J. K., Farber, E., Zhu, Z., . . . Rich, S. S. (2019). Type 1 Diabetes Risk in African-Ancestry Participants and Utility of an Ancestry-Specific Genetic Risk Score. DIABETES CARE, 42(3), 406-415. doi:10.2337/dc18-1727

Hippich, M., Beyerlein, A., Hagopian, W. A., Krischer, J. P., Vehik, K., Knoop, J., . . . Ziegler, A. -G. (2019). Genetic Contribution to the Divergence in Type 1 Diabetes Risk Between Children From the General Population and Children From Affected Families. DIABETES, 68(4), 847-857. doi:10.2337/db18-0882

2018

Marquez, A., Kerick, M., Zhernakova, A., Gutierrez-Achury, J., Chen, W. -M., Onengut-Gumuscu, S., . . . Martin, J. (2018). Meta-analysis of Immunochip data of four autoimmune diseases reveals novel single-disease and cross-phenotype associations. GENOME MEDICINE, 10. doi:10.1186/s13073-018-0604-8

Da Mesquita, S., Louveau, A., Vaccari, A., Smirnov, I., Cornelison, R. C., Kingsmore, K. M., . . . Kipnis, J. (2018). Publisher Correction: Functional aspects of meningeal lymphatics in ageing and Alzheimer's disease.. Nature, 564(7734), E7. doi:10.1038/s41586-018-0689-7

Morioka, S., Perry, J. S. A., Raymond, M. H., Medina, C. B., Zhu, Y., Zhao, L., . . . Ravichandran, K. S. (2018). Efferocytosis induces a novel SLC program to promote glucose uptake and lactate release. NATURE, 563(7733), 714-718. doi:10.1038/s41586-018-0735-5

Rewers, M., Hyoty, H., Lernmark, A., Hagopian, W., She, J. -X., Schatz, D., . . . Krischer, J. (2018). The Environmental Determinants of Diabetes in the Young (TEDDY) Study: 2018 Update. CURRENT DIABETES REPORTS, 18(12). doi:10.1007/s11892-018-1113-2

Westra, H. -J., Martinez-Bonet, M., Onengut-Gumuscu, S., Lee, A., Luol, Y., Teslovich, N., . . . Raychaudhuri, S. (2018). Fine-mapping and functional studies highlight potential causal variants for rheumatoid arthritis and type 1 diabetes. NATURE GENETICS, 50(10), 1366-+. doi:10.1038/s41588-018-0216-7

Da Mesquita, S., Louveau, A., Vaccari, A., Smirnov, I., Cornelison, R. C., Kingsmore, K. M., . . . Kipnis, J. (2018). Functional aspects of meningeal lymphatics in ageing and Alzheimer's disease. NATURE, 560(7717), 185-+. doi:10.1038/s41586-018-0368-8

Sharma, A., Liu, X., Hadley, D., Hagopian, W., Chen, W. -M., Onengut-Gumuscu, S., . . . She, J. -X. (2018). Identification of non-HLA genes associated with development of islet autoimmunity and type 1 diabetes in the prospective TEDDY cohort. JOURNAL OF AUTOIMMUNITY, 89, 90-100. doi:10.1016/j.jaut.2017.12.008

2017

Penberthy, K. K., Rival, C., Shankman, L. S., Raymond, M. H., Zhang, J., Perry, J. S. A., . . . Ravichandran, K. S. (2017). Context-dependent compensation among phosphatidylserine-recognition receptors. SCIENTIFIC REPORTS, 7. doi:10.1038/s41598-017-15191-1

Shi, Y., Stornetta, R. L., Stornetta, D. S., Onengut-Gumuscu, S., Farber, E. A., Turner, S. D., . . . Bayliss, D. A. (2017). Neuromedin B Expression Defines the Mouse Retrotrapezoid Nucleus. JOURNAL OF NEUROSCIENCE, 37(48), 11744-11757. doi:10.1523/JNEUROSCI.2055-17.2017

Norris, J. M., Lee, H. -S., Frederiksen, B., Erlund, I., Uusitalo, U., Yang, J., . . . Hagopian, W. (2018). Plasma 25-Hydroxyvitamin D Concentration and Risk of Islet Autoimmunity. DIABETES, 67(1), 146-154. doi:10.2337/db17-0802

Newman, J. R. B., Conesa, A., Mika, M., New, F. N., Onengut-Gumuscu, S., Atkinson, M. A., . . . Concannon, P. (2017). Disease-specific biases in alternative splicing and tissue-specific dysregulation revealed by multitissue profiling of lymphocyte gene expression in type 1 diabetes. GENOME RESEARCH, 27(11), 1807-1815. doi:10.1101/gr.217984.116

Manichaikul, A., Wang, X. -Q., Sun, L., Dupuis, J., Borczuk, A. C., Nguyen, J. N., . . . Lederer, D. J. (2017). Genome-wide association study of subclinical interstitial lung disease in MESA. RESPIRATORY RESEARCH, 18. doi:10.1186/s12931-017-0581-2

Steck, A. K., Xu, P., Geyer, S., Redondo, M. J., Antinozzi, P., Wentworth, J. M., . . . Pugliese, A. (2017). Can Non-HLA Single Nucleotide Polymorphisms Help Stratify Risk in TrialNet Relatives at Risk for Type 1 Diabetes?. JOURNAL OF CLINICAL ENDOCRINOLOGY & METABOLISM, 102(8), 2873-2880. doi:10.1210/jc.2016-4003

Lundgren, M., Steed, L. J., Tamura, R., Jonsdottir, B., Gesualdo, P., Crouch, C., . . . Larsson, H. E. (2017). Analgesic antipyretic use among young children in the TEDDY study: no association with islet autoimmunity. BMC PEDIATRICS, 17. doi:10.1186/s12887-017-0884-y

Manichaikul, A., Sun, L., Borczuk, A. C., Onengut-Gumuscu, S., Farber, E. A., Mathai, S. K., . . . Lederer, D. J. (2017). Plasma Soluble Receptor for Advanced Glycation End Products in Idiopathic Pulmonary Fibrosis. ANNALS OF THE AMERICAN THORACIC SOCIETY, 14(5), 628-635. doi:10.1513/AnnalsATS.201606-485OC

Marin, I. A., Goertz, J. E., Ren, T., Rich, S. S., Onengut-Gumuscu, S., Farber, E., . . . Gaultier, A. (2017). Microbiota alteration is associated with the development of stress-induced despair behavior. SCIENTIFIC REPORTS, 7. doi:10.1038/srep43859

2016

Han, C. Z., Juncadella, I. J., Kinchen, J. M., Buckley, M. W., Klibanov, A. L., Dryden, K., . . . Ravichandran, K. S. (2016). Macrophages redirect phagocytosis by non-professional phagocytes and influence inflammation. NATURE, 539(7630), 570-+. doi:10.1038/nature20141

Torn, C., Liu, X., Hagopian, W., Lernmark, A., Simell, O., Rewers, M., . . . Krischer, J. (2016). Complement gene variants in relation to autoantibodies to beta cell specific antigens and type 1 diabetes in the TEDDY Study. SCIENTIFIC REPORTS, 6. doi:10.1038/srep27887

Han, B., Pouget, J. G., Slowikowski, K., Stahl, E., Lee, C. H., Diogo, D., . . . Raychaudhuri, S. (2016). A method to decipher pleiotropy by detecting underlying heterogeneity driven by hidden subgroups applied to autoimmune and neuropsychiatric diseases. NATURE GENETICS, 48(7), 803-+. doi:10.1038/ng.3572

Uusitalo, U., Liu, X., Yang, J., Aronsson, C. A., Hummel, S., Butterworth, M., . . . Virtanen, S. M. (2016). Association of Early Exposure of Probiotics and Islet Autoimmunity in the TEDDY Study. JAMA PEDIATRICS, 170(1), 20-28. doi:10.1001/jamapediatrics.2015.2757

Sharma, A., Liu, X., Hadley, D., Hagopian, W., Liu, E., Chen, W. -M., . . . She, J. -X. (2016). Identification of Non-HLA Genes Associated with Celiac Disease and Country-Specific Differences in a Large, International Pediatric Cohort. PLOS ONE, 11(3). doi:10.1371/journal.pone.0152476

2015

Ge, Y., Onengut-Gumuscu, S., Quinlan, A. R., Mackey, A. J., Wright, J. A., Buckner, J. H., . . . Concannon, P. (2016). Targeted Deep Sequencing in Multiple-Affected Sibships of European Ancestry Identifies Rare Deleterious Variants in PTPN22 That Confer Risk for Type 1 Diabetes. DIABETES, 65(3), 794-802. doi:10.2337/db15-0322

Wang, Q., Grainger, A. T., Manichaikul, A., Farber, E., Onengut-Gumuscu, S., & Shi, W. (2015). Genetic linkage of hyperglycemia and dyslipidemia in an intercross between BALB/cJ and SM/J Apoe-deficient mouse strains. BMC GENETICS, 16. doi:10.1186/s12863-015-0292-y

Keating, B. J., van Setten, J., Jacobson, P. A., Holmes, M. V., Verma, S. S., Chandrupatla, H. R., . . . Asselbergs, F. W. (2015). Design and Implementation of the International Genetics and Translational Research in Transplantation Network. TRANSPLANTATION, 99(11), 2401-2412. doi:10.1097/TP.0000000000000913

Gutierrez-Achury, J., Romanos, J., Bakker, S. F., Kumar, V., de Haas, E. C., Trynka, G., . . . Wijmenga, C. (2015). Contrasting the Genetic Background of Type 1 Diabetes and Celiac Disease Autoimmunity. DIABETES CARE, 38, S37-S44. doi:10.2337/dcs15-2007

Lenz, T. L., Deutsch, A. J., Han, B., Hu, X., Okada, Y., Eyre, S., . . . Raychaudhuri, S. (2015). Widespread non-additive and interaction effects within HLA loci modulate the risk of autoimmune diseases. NATURE GENETICS, 47(9), 1085-+. doi:10.1038/ng.3379

Hu, X., Deutsch, A. J., Lenz, T. L., Onengut-Gumuscu, S., Han, B., Chen, W. -M., . . . Raychaudhuri, S. (2015). Additive and interaction effects at three amino acid positions in HLA-DQ and HLA-DR molecules drive type 1 diabetes risk. NATURE GENETICS, 47(8), 898-+. doi:10.1038/ng.3353

Wallace, C., Cutler, A. J., Pontikos, N., Pekalski, M. L., Burren, O. S., Cooper, J. D., . . . Wicker, L. S. (2015). Dissection of a Complex Disease Susceptibility Region Using a Bayesian Stochastic Search Approach to Fine Mapping. PLOS GENETICS, 11(6). doi:10.1371/journal.pgen.1005272

Hadley, D., Hagopian, W., Liu, E., She, J. -X., Simell, O., Akolkar, B., . . . Agardh, D. (2015). HLA-DPB1☆04:01 Protects Genetically Susceptible Children from Celiac Disease Autoimmunity in the TEDDY Study. AMERICAN JOURNAL OF GASTROENTEROLOGY, 110(6), 915-920. doi:10.1038/ajg.2015.150

Furman, D., Jojic, V., Sharma, S., Shen-Orr, S. S., Angel, C. J. L., Onengut-Gumuscu, S., . . . Davis, M. M. (2015). Cytomegalovirus infection enhances the immune response to influenza. SCIENCE TRANSLATIONAL MEDICINE, 7(281). doi:10.1126/scitranslmed.aaa2293

Brorsson, C. A., Onengut, S., Chen, W. -M., Wenzlau, J., Yu, L., Baker, P., . . . Pociot, F. (2015). Novel Association Between Immune-Mediated Susceptibility Loci and Persistent Autoantibody Positivity in Type 1 Diabetes. DIABETES, 64(8), 3017-3027. doi:10.2337/db14-1730

Isobe, N., Madireddy, L., Khankhanian, P., Matsushita, T., Caillier, S. J., More, J. M., . . . Oksenberg, J. R. (2015). An ImmunoChip study of multiple sclerosis risk in African Americans. BRAIN, 138, 1518-1530. doi:10.1093/brain/awv078

Lönnrot, M., Lynch, K., Larsson, H. E., Lernmark, Å., Rewers, M., Hagopian, W., . . . TEDDY Study Group. (2015). A method for reporting and classifying acute infectious diseases in a prospective study of young children: TEDDY.. BMC pediatrics, 15, 24. doi:10.1186/s12887-015-0333-8

Onengut-Gumuscu, S., Chen, W. -M., Burren, O., Cooper, N. J., Quinlan, A. R., Mychaleckyj, J. C., . . . Rich, S. S. (2015). Fine mapping of type 1 diabetes susceptibility loci and evidence for colocalization of causal variants with lymphoid gene enhancers. NATURE GENETICS, 47(4), 381-U199. doi:10.1038/ng.3245

Agardh, D., Lee, H. -S., Kurppa, K., Simell, V., Aronsson, C. A., Jörneus, O., . . . TEDDY Study Group. (2015). Clinical features of celiac disease: a prospective birth cohort.. Pediatrics, 135(4), 627-634. doi:10.1542/peds.2014-3675

Steck, A. K., Vehik, K., Bonifacio, E., Lernmark, A., Ziegler, A. -G., Hagopian, W. A., . . . TEDDY Study Group. (2015). Predictors of Progression From the Appearance of Islet Autoantibodies to Early Childhood Diabetes: The Environmental Determinants of Diabetes in the Young (TEDDY).. Diabetes care, 38(5), 808-813. doi:10.2337/dc14-2426

Aronsson, C. A., Lee, H. -S., Liu, E., Uusitalo, U., Hummel, S., Yang, J., . . . TEDDY STUDY GROUP. (2015). Age at gluten introduction and risk of celiac disease.. Pediatrics, 135(2), 239-245. doi:10.1542/peds.2014-1787

Wang, Q., Grainger, A., Manichaikul, A., Farber, E., Onengut-Gumuscu, S., & Shi, W. (2015). Genetic basis underlying connection between hyperglycemia and dyslipidemia inApoe-deficient mice. doi:10.1101/021287

2014

Kemppainen, K. M., Ardissone, A. N., Davis-Richardson, A. G., Fagen, J. R., Gano, K. A., León-Novelo, L. G., . . . TEDDY Study Group. (2015). Early childhood gut microbiomes show strong geographic differences among subjects at high risk for type 1 diabetes.. Diabetes care, 38(2), 329-332. doi:10.2337/dc14-0850

Cooper, N. J., Shtir, C. J., Smyth, D. J., Guo, H., Swafford, A. D., Zanda, M., . . . Todd, J. A. (2015). Detection and correction of artefacts in estimation of rare copy number variants and analysis of rare deletions in type 1 diabetes. HUMAN MOLECULAR GENETICS, 24(6), 1774-1790. doi:10.1093/hmg/ddu581

Torn, C., Hadley, D., Lee, H. -S., Hagopian, W., Lernmark, A., Simell, O., . . . Krischer, J. (2015). Role of Type 1 Diabetes-Associated SNPs on Risk of Autoantibody Positivity in the TEDDY Study. DIABETES, 64(5), 1818-1829. doi:10.2337/db14-1497

Evangelou, M., Smyth, D. J., Fortune, M. D., Burren, O. S., Walker, N. M., Guo, H., . . . Wallace, C. (2014). A Method for Gene-Based Pathway Analysis Using Genomewide Association Study Summary Statistics Reveals Nine New Type 1 Diabetes Associations. GENETIC EPIDEMIOLOGY, 38(8), 661-670. doi:10.1002/gepi.21853

Tomlinson, M. J., Pitsillides, A., Pickin, R., Mika, M., Keene, K. L., Hou, X., . . . Onengut-Gumuscu, S. (2014). Fine Mapping and Functional Studies of Risk Variants for Type 1 Diabetes at Chromosome 16p13.13. DIABETES, 63(12), 4360-4368. doi:10.2337/db13-1785

Liu, E., Lee, H. -S., Aronsson, C. A., Hagopian, W. A., Koletzko, S., Rewers, M. J., . . . TEDDY Study Group. (2014). Risk of pediatric celiac disease according to HLA haplotype and country.. The New England journal of medicine, 371(1), 42-49. doi:10.1056/nejmoa1313977

Fernandez, C. A., Smith, C., Yang, W., Date, M., Bashford, D., Larsen, E., . . . Relling, M. V. (2014). HLA-DRB1*07:01 is associated with a higher risk of asparaginase allergies. BLOOD, 124(8), 1266-1276. doi:10.1182/blood-2014-03-563742

Hu, X., Kim, H., Raj, T., Brennan, P. J., Trynka, G., Teslovich, N., . . . Raychaudhuri, S. (2014). Regulation of Gene Expression in Autoimmune Disease Loci and the Genetic Basis of Proliferation in CD4+ Effector Memory T Cells. PLOS GENETICS, 10(6). doi:10.1371/journal.pgen.1004404

Pontikos, N., Smyth, D. J., Schuilenburg, H., Howson, J. M. M., Walker, N. M., Burren, O. S., . . . Wallace, C. (2014). A hybrid qPCR/SNP array approach allows cost efficient assessment of KIR gene copy numbers in large samples. BMC GENOMICS, 15. doi:10.1186/1471-2164-15-274

Yang, J., Lernmark, Å., Uusitalo, U. M., Lynch, K. F., Veijola, R., Winkler, C., . . . TEDDY Study Group. (2014). Prevalence of obesity was related to HLA-DQ in 2-4-year-old children at genetic risk for type 1 diabetes.. International journal of obesity (2005), 38(12), 1491-1496. doi:10.1038/ijo.2014.55

Boraska, V., Franklin, C. S., Floyd, J. A. B., Thornton, L. M., Huckins, L. M., Southam, L., . . . Bulik, C. M. (2014). A genome-wide association study of anorexia nervosa. MOLECULAR PSYCHIATRY, 19(10), 1085-1094. doi:10.1038/mp.2013.187

Zanda, M., Onengut-Gumuscu, S., Walker, N., Shtir, C., Gallo, D., Wallace, C., . . . Rich, S. S. (2014). A Genome-Wide Assessment of the Role of Untagged Copy Number Variants in Type 1 Diabetes. PLOS GENETICS, 10(5). doi:10.1371/journal.pgen.1004367

2013

Okada, Y., Wu, D., Trynka, G., Raj, T., Terao, C., Ikari, K., . . . Plenge, R. M. (2014). Genetics of rheumatoid arthritis contributes to biology and drug discovery.. Nature, 506(7488), 376-381. doi:10.1038/nature12873

Elding Larsson, H., Vehik, K., Gesualdo, P., Akolkar, B., Hagopian, W., Krischer, J., . . . TEDDY Study Group. (2014). Children followed in the TEDDY study are diagnosed with type 1 diabetes at an early stage of disease.. Pediatric diabetes, 15(2), 118-126. doi:10.1111/pedi.12066

Hunt, K. A., Mistry, V., Bockett, N. A., Ahmad, T., Ban, M., Barker, J. N., . . . van Heel, D. A. (2013). Negligible impact of rare autoimmune-locus coding-region variants on missing heritability. NATURE, 498(7453), 232-+. doi:10.1038/nature12170

Liu, J. Z., Hov, J. R., Folseraas, T., Ellinghaus, E., Rushbrook, S. M., Doncheva, N. T., . . . Karlsen, T. H. (2013). Dense genotyping of immune-related disease regions identifies nine new risk loci for primary sclerosing cholangitis. NATURE GENETICS, 45(6), 670-+. doi:10.1038/ng.2616

Hinks, A., Cobb, J., Marion, M. C., Prahalad, S., Sudman, M., Bowes, J., . . . Thompson, S. D. (2013). Dense genotyping of immune-related disease regions identifies 14 new susceptibility loci for juvenile idiopathic arthritis. NATURE GENETICS, 45(6), 664-+. doi:10.1038/ng.2614

Ferreira, R. C., Freitag, D. F., Cutler, A. J., Howson, J. M. M., Rainbow, D. B., Smyth, D. J., . . . Todd, J. A. (2013). Functional IL6R 358Ala Allele Impairs Classical IL-6 Receptor Signaling and Influences Risk of Diverse Inflammatory Diseases. PLOS GENETICS, 9(4). doi:10.1371/journal.pgen.1003444

Faraco, J., Lin, L., Kornum, B. R., Kenny, E. E., Trynka, G., Einen, M., . . . Mignot, E. (2013). ImmunoChip Study Implicates Antigen Presentation to T Cells in Narcolepsy. PLOS GENETICS, 9(2). doi:10.1371/journal.pgen.1003270

Jia, X., Han, B., Onengut-Gumuscu, S., Chen, W. -M., Concannon, P. J., Rich, S. S., . . . de Bakker, P. I. W. (2013). Imputing Amino Acid Polymorphisms in Human Leukocyte Antigens. PLOS ONE, 8(6). doi:10.1371/journal.pone.0064683

2012

Eyre, S., Bowes, J., Diogo, D., Lee, A., Barton, A., Martin, P., . . . Worthington, J. (2012). High-density genetic mapping identifies new susceptibility loci for rheumatoid arthritis. NATURE GENETICS, 44(12), 1336-1340. doi:10.1038/ng.2462

Zanda, M., Onengut, S., Walker, N., Todd, J. A., Clayton, D. G., Rich, S. S., . . . Plagnol, V. (2012). Validity of the Family-Based Association Test for Copy Number Variant Data in the Case of Non-Linear Intensity-Genotype Relationship. GENETIC EPIDEMIOLOGY, 36(8), 895-898. doi:10.1002/gepi.21674

2011

Hunt, K. A., Smyth, D. J., Balschun, T., Ban, M., Mistry, V., Ahmad, T., . . . van Heel, D. A. (2012). Rare and functional SIAE variants are not associated with autoimmune disease risk in up to 66,924 individuals of European ancestry. NATURE GENETICS, 44(1), 3-5. doi:10.1038/ng.1037

Trynka, G., Hunt, K. A., Bockett, N. A., Romanos, J., Mistry, V., Szperl, A., . . . van Heel, D. A. (2011). Dense genotyping identifies and localizes multiple common and rare variant association signals in celiac disease. NATURE GENETICS, 43(12), 1193-1U45. doi:10.1038/ng.998

Keene, K. L., Quinlan, A. R., Hou, X., Hall, I. M., Mychaleckyj, J. C., Onengut-Gumuscu, S., & Concannon, P. (2012). Evidence for two independent associations with type 1 diabetes at the 12q13 locus. GENES AND IMMUNITY, 13(1), 66-70. doi:10.1038/gene.2011.56

2010

Hilner, J. E., Perdue, L. H., Sides, E. G., Pierce, J. J., Waegner, A. M., Aldrich, A., . . . Akolkar, B. (2010). Designing and implementing sample and data collection for an international genetics study: the Type 1 Diabetes Genetics Consortium (T1DGC). CLINICAL TRIALS, 7, S5-S32. doi:10.1177/1740774510373497