Services

Click here for a full service list across all School of Medicine Research Cores

Data Management Service (free for cancer center members and fee-based for others)
Custom bioinformatics / biostatistical support
Proteomics Data Analysis
Gene expression profiling (Bulk): RNA-seq and microarray
Small RNA-seq data analysis
Allele-specific gene expression analysis
Single Cell RNA-seq (scRNA-seq) (expression profiling, cluster generation, cluster annotation, Marker gene identification, pseudotime trajectory analysis (PHATE, Monocle etc.), pathway analysis, etc.)
Single Cell ATAC-seq (scATAC-seq) data analysis
Integrated scRNA-seq and scATAC-seq data analysis
Single Cell Spatial genomics data analysis (CosMx (Nanostring/Bruker), CytAssist – Visium V2 and HD (10x Genomics) etc.)
DNA variation (variant calling and annotation (SNP) and GWAS)
Copy number variation (Aneuploidy, insertion/deletion etc.)
Genome-wide quantification of DNA double-strand break
DNA protein binding (ChIP-seq, CHIRP-seq, etc.)
RNA binding (CLIP-seq, PAR-CLIP, CLASH, etc.)
ATAC-seq data analysis
CUT&RUN data analysis
DNA methylation: sequence-based analysis and array-based analysis
Microbiome data analysis (16S rRNA, shotgun metagenomics, etc.)
Metabolomics data analysis (Targeted & Untargeted)
Pathway and functional analysis
Survival analysis (with TCGA sequencing and clinical data)
CRISPR screening experimental design and data analysis
Power Analysis (Estimation of sample size)
Grant and manuscript support

If the data analysis service of your need is not listed above, please contact Pankaj Kumar to enquire about support for custom projects.