Biomedical Informatics
About
Publications
Learn MoreLead by Director Jason A. Lyman, M.D., Ms., Faculty in the Division of Biomedical Informatics apply informatics principles, tools, and knowledge in support of all core missions of the UVA School of Medicine through formal and informal teaching and advising, original, independent and collaborative research, and service in the use of informatics for population health, clinical care, and healthcare operations. We are the academic home to an ACGME-accredited clinical informatics fellowship.
Publications
Learn MoreResearch Focus
- Population Health – Designing and deploying informatics-based interventions to support cancer prevention, disease management, and patient engagement
- Consumer Informatics – Conducting needs assessments for, developing, implementing and evaluating novel patient-centered, for family health history collection, risk assessment and clinical decision support.
- Human Factors and Culturally Informed Design – Developing tools to improve health & quality of life among populations including those who live with chronic conditions, are underserved or are marginalized through the application of approaches based in systems engineering, cultural anthropology, health informatics and Community Based Participatory Research (CBPR)
- Mathematical Modeling and Medical Decision Making – Designing optimal control guidelines for disease surveillance and chronic disease management using simulation, Markov decision processes and optimization methods.
- Clinical Decision Support – Supporting medical center operations and clinical care by optimizing our electronic health record with the design and development of interventions to improve quality, safety, and clinical efficiency.
- Biomedical Data Analytics – Optimizing biomedical investigation with the use of reusable cloud-based frameworks that facilitate the construction of shareable computational methods based on FAIR data principles
- Informatics Training and Education – Formal courses in Public Health Sciences, advising students and trainees in within and beyond Public Health Sciences, and academic oversight of an ACGME-accredited clinical informatics fellowship
Biomedical Informatics projects
Personnel:James Harrison, Andrew Post
Development of a software framework allowing detection, aggregation and reporting of arbitrary patterns of change in time course data. An implementation in Java called PROTEMPA has been developed in collaboration with Andrew Post. PROTEMPA identifies time intervals over which patterns hold in raw data using software “detectors” specific for those patterns, and aggregates these intervals into higher order patterns using rules that define the allowable temporal relationships between intervals. PROTEMPA can be used for retrospective or prospective analysis.
Personnel: James Harrison (PI), Andrew Post
Support: National Library of Medicine, 9/30/2003 – 9/29/2006
Develop and test an adaptive user interface that presents patient data to clinicians in a graphical display and organizes the display based on patterns of change (detected by PROTEMPA) contained within the data. A preliminary study of the use of the interface by medical residents carrying out patient monitoring tasks is being evaluated.
Personnel: James Harrison
Support: NCI Shared Pathology Informatics Network, 8/13/2001-07/31/2006
A collaboration among pathologists at the University of Pittsburgh, Harvard and UCLA to create a corpus of annotated pathology reports with textual references to organs, procedures and key diagnostic concepts identified. Will form the basis for testing auto-coding systems.
Personnel: James Harrison
Creation of a new XML vocabulary that can express the range of types of procedures typically found in a clinical laboratory, and evaluation of the syntax for ease of use and document complexity as compared with the generic structural markup provided by the HL7 Clinical Document Architecture “narrative block.”
Biomedical Informatics Faculty
The faculty and professional staff of the Division of Biomedical Informatics is multidisciplinary and includes a group of core faculty and additional affiliated faculty who are keenly interested in informatics issues. Affiliated faculty typically have primary appointments in clinical departments and are important cross-departmental collaborators.
Name | Phone | E-mail Address |
---|---|---|
Clark, Timothy | twc8q@virginia.edu | |
Detmer, Don E. | 434-924-0198 | detmer@virginia.edu |
Valdez, Rupa | 434-982-2510 | rsv9d@virginia.edu |
Lyman, Jason - Director | 434-924-8240 | jl3de@virginia.edu |
Lobo, Jennifer | 434-924-2813 | jem4yb@virginia.edu |
Cohn, Wendy | 434-924-8565 | wfc2r@virginia.edu |