Selected Publications
Protein sequencing with single amino acid resolution discerns peptides that discriminate tropomyosin proteoforms
, , , , Gloria M. Sheynkman
Long-read proteogenomics to connect disease-associated sQTLs to 2 the protein isoform effectors of disease
Abdullah Abood, Larry D. Mesner, Erin D. Jeffery , Mayank Murali , Micah D. Lehe , Jamie Saquing , Charles R. Farber, Gloria M. Sheynkman. The American Journal of Human Genetics. 2024. 111(9): 1914-1931.
Systematic assessment of long-read RNA-seq methods for transcript identification and quantification
F.J. Pardo-Palacios, D. Wang, F. Reese, M. Diekhans, S. Carbonell-Sala, B. Williams, J.E. Loveland, M. De María, M.S. Adams, G. Balderrama-Gutierrez, A.K. Behera, J.M. Gonzalez, T. Hunt, J. Lagarde, C.E. Liang, H. Li, M. Jerryd Meade, D.A. Moraga Amador, A.D. Prjibelski, I. Birol, H. Bostan, A.M. Brooks, M. Hasan Çelik, Y. Chen, M.R.M. Du, C. Felton, J. Göke, S. Hafezqorani, R. Herwig, H. Kawaji, J. Lee, J. Liang Li, M. Lienhard, A. Mikheenko, D. Mulligan, K. Ming Nip, M. Pertea, M.E. Ritchie, A.D. Sim, A.D. Tang, Y. Kei Wan, C. Wang, B.Y. Wong, C. Yang, I. Barnes, A. Berry, S. Capella, N. Dhillon, J.M. Fernandez-Gonzalez, L. Ferrández-Peral, N. Garcia-Reyero, S. Goetz, C. Hernández-Ferrer, L. Kondratova, T. Liu, A. Martinez-Martin, C. Menor, J. Mestre-Tomás, J.M. Mudge, N.G. Panayotova, A. Paniagua, D. Repchevsky, E. Rouchka, B. Saint-John, E. Sapena, Leon Sheynkman, M. Laird Smith, M.M. Suner, H. Takahashi, I.A. Youngworth, P. Carninci, N.D. Denslow, R. Guigó, M.E. Hunter, H.U. Tilgner, B.J. Wold, C. Vollmers, A. Frankish, K. Fai Au, Gloria M. Sheynkman, A. Mortazavi, A. Conesa, A.N. Brooks. Nature Methods. 2024. 21: 1349-1363.
Enhanced protein isoform characterization through long-read proteogenomics
Rachel M. Miller, Ben T. Jordan, Madison M. Mehlferber, Erin D. Jeffery, Christina Chatzipantsiou, Simi Kaur, Robert J. Millikin, Yunxiang Dai, Simone Tiberi, Peter J. Castaldi, Michael R. Shortreed, Chance John Luckey, Ana Conesa, Lloyd M. Smith, Anne Deslattes Mays, Gloria M. Sheynkman
