Bioinformatics & Genomics
About
Research in Bioinformatics and Genomics at UVA uses quantitative methods to describe the behavior of genes, genomes, and biological systems.At the intersection of experimental and computational biology, genomics research involves interpretation and integration of large-scale, genome-wide datasets.
These approaches are being applied to diverse topics in biology and medicine including cancer genomics, human and model organism genetics, epigenetics, and evolution. Active areas of research at the University of Virginia include whole-genome sequencing, cancer genome evolution, disease gene mapping, personalized medicine, gene expression profiling, epigenome mapping, high-throughput functional genetics, genome annotation, protein evolution, and pathway reconstruction.
Genomics and bioinformatics research often requires the development of new techniques, including both experimental protocols and data analysis algorithms, to enable a deeper understanding of complex biological systems. In this respect, the field is entering a new and exciting era; rapidly improving “next-generation” DNA sequencing technologies now allow for the routine sequencing of entire genomes and transcriptomes, or of virtually any targeted set of DNA or RNA molecules.
The exponential explosion of genomic data fueled by these technologies presents an unprecedented opportunity to elucidate the molecular underpinnings of natural variation and human disease, but the sheer abundance and complexity of these data also pose significant and unsolved bioinformatic challenges. The scope of these opportunities and challenges promises to revolutionize biology and medicine.
Faculty
Abounader, Roger
Basic and translational brain tumor research
Bekiranov, Stefan
Computational Biology; Bioinformatics; Precision Medicine; Machine Learning/AI; Quantum Computing
Bielinsky, Anja Katrin
Genome instability syndromes in cancer and immune deficiencies
Bourne, Philip E
Data Science
Campbell, John
The Neurobiology of Energy Balance
Chen, Wei-Min
Statistical genetics and genomics.
Civelek, Mete
Systems Genetics Approaches to Understand Cardiometabolic Traits
Cowardin, Carrie A.
The maternal and infant microbiome in childhood growth and immunity
Dolatshahi, Sepideh
Systems Immunology, Cancer Systems Biology, , Neonatal and Maternal Immunology
Dremel, Sarah
Herpesvirus gene expression & RNA biology
Dudley, Andrew
Tumor microenvironment and mechanisms of tumor neovascularization
Farber, Charles R.
Systems Genetics of Skeletal Development and Maintenance
Garrett-Bakelman, Francine
Acute Myeloid Leukemia: molecular and cellular biology events which mediate aberrant epigenetic and transcriptional mechanisms during disease establishment and progression
Grainger, Robert M.
Molecular embryology--gene regulation in cells committed to specific developmental lineages
Guler, Jennifer
Mechanisms of Genetic and Metabolic Adaptation in the Malaria Parasite, Plasmodium falciparum
Hirschi, Karen Kemper
Understanding Cellular and Molecular Mechanisms Leading to Blood Vessel Formation
Li, Hui
Gene regulation in cancer, RNA processing; Epigenetic modification; Stem cell and development
Loughran, Jr., Thomas P
Hematologic malignancies; bone marrow disorders; leukemia; large granular lymphocyte (LGL)
Ma, Jianjie
Physiology & Biophysics
Manichaikul, Ani W.
Statistical Genetics, Genetic Epidemiology, Biostatistics, Network analysis
McNamara, Coleen A.
Immune System Regulation of Cardiometabolic Disease
Miller, Clint L.
Genetic variation, Complex diseases, Coronary artery disease, Genomics, Epigenomics, Regulatory mechanisms, Vascular biology, Pharmacology and Physiology
Minor, Wladek
Structure-Function Relationships in Macromolecules; Infectious Diseases and Drug Discovery; Bioinformatics and Big Data; Scientific Reproducibility
Naegle, Kristen
Regulation and function of tyrosine phosphorylation in complex networks
O’Rourke, Eyleen Jorgelina
Obesity and Aging
Owens, Gary K.
Identification of Factors and Mechanisms that Regulate the Stability of Late Stage Atherosclerotic Lesions and the Probability of Thromboembolic Events Including a Heart Attack or Stroke
Papin, Jason A.
Systems biology, infectious disease, cancer, toxicology, metabolic engineering
Parichy, David
Developmental Genetics, Evolution and Regeneration
Platig, John H
Gene regulatory networks, Systems genetics, Multi-omic data integration, Network science
Ratan, Aakrosh
Genomics, Molecular Evolution, Algorithm Design and Analysis
Rekosh, David M.
Human Immunodeficiency Virus Gene Expression; Human Endogenous Viruses; SARS-CoV-2 Protein Trafficking; Post-transcriptional Gene Regulation
Rich, Stephen S.
Genetic basis of common human disease, including type 1 diabetes, diabetic complications, ischemic stroke, atherosclerosis
Saucerman, Jeffrey J.
Roles of complex signaling networks involved in the regulation of cardiovascular function and disease
Sheffield, Nathan
computational biology & bioinformatics; high performance computing; epigenomics & chromatin; pediatric cancer; computational regulatory genomics; machine learning
Sheybani, Natasha
Biomedical Engineering
Sheynkman, Gloria M.
Proteoform Systems Biology: proteogenomic approaches to uncover the role of proteomic variation in human disease
Stukenberg, P. Todd
Mechanisms of chromosome segregation in Mitosis and generation of Chromosomal Instability in tumors
Sun, Jie
Viral immunology, T cells, Macrophages, Tissue repair
Swiatecka-Urban, Agnieszka
Regulation of cell-surface stability and intracellular trafficking of membrane proteins in epithelial cells
Syed, Sana
Understanding why a subset of children living in in low- and middle-income countries around the world develop growth and vaccine failure. Investigating the causes and progression of inflammatory enteropathies of the gastrointestinal lumen. Integrating data science-driven approaches with medicine to drive precision medicine.
Tang, Shangming
Complex Genome Rearrangements
Trinh, Bon Q
Understanding Protein and RNA regulations of gene expression via chromatin structure in myeloid cell development and diseases
Wang, Yuh-Hwa
Genome instability in cancer and repeat expansion diseases
Woodfolk, Judith A.
The immune response to common cold and allergens in health and disease.
Worley, Melanie I.
Investigating regeneration through genetics and single-cell analysis
Wythe, Joshua D
Cardiovascular Development and Cerebrovascular Pathologies
Zang, Chongzhi
Bioinformatics methodology development; Epigenetics and chromatin biology; Transcriptional regulation; Cancer genomics and epigenomics; Statistical methods for biomedical data integration; Advanced machine learning; Theoretical and computational biophysics
Zhang, Tian
Integrating high-throughput proteomic, chemical, genetic and computational tools for target identification and drug discovery in cancer biology
Zunder, Eli
Single Cell Analysis