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Bioinformatics & Genomics

About

Research in Bioinformatics and Genomics at UVA uses quantitative methods to describe the behavior of genes, genomes, and biological systems.At the intersection of experimental and computational biology, genomics research involves interpretation and integration of large-scale, genome-wide datasets.

These approaches are being applied to diverse topics in biology and medicine including cancer genomics, human and model organism genetics, epigenetics, and evolution. Active areas of research at the University of Virginia include whole-genome sequencing, cancer genome evolution, disease gene mapping, personalized medicine, gene expression profiling, epigenome mapping, high-throughput functional genetics, genome annotation, protein evolution, and pathway reconstruction.

Genomics and bioinformatics research often requires the development of new techniques, including both experimental protocols and data analysis algorithms, to enable a deeper understanding of complex biological systems. In this respect, the field is entering a new and exciting era; rapidly improving “next-generation” DNA sequencing technologies now allow for the routine sequencing of entire genomes and transcriptomes, or of virtually any targeted set of DNA or RNA molecules.

The exponential explosion of genomic data fueled by these technologies presents an unprecedented opportunity to elucidate the molecular underpinnings of natural variation and human disease, but the sheer abundance and complexity of these data also pose significant and unsolved bioinformatic challenges. The scope of these opportunities and challenges promises to revolutionize biology and medicine.

Faculty

  • Abounader, Roger

    Basic and translational brain tumor research

  • Auble, David T.

    Molecular Mechanisms of Transcriptional Regulation

  • Bekiranov, Stefan

    Computational Biology; Bioinformatics; Precision Medicine; Machine Learning/AI; Quantum Computing

  • Bielinsky, Anja Katrin

    Genome instability syndromes in cancer and immune deficiencies

  • Bourne, Philip E

    Data Science

  • Campbell, John

    The Neurobiology of Energy Balance

  • Civelek, Mete

    Systems Genetics Approaches to Understand Cardiometabolic Traits

  • Cowardin, Carrie A.

    The maternal and infant microbiome in childhood growth and immunity

  • Dolatshahi, Sepideh

    Systems Immunology, Cancer Systems Biology, , Neonatal and Maternal Immunology

  • Dudley, Andrew

    Tumor microenvironment and mechanisms of tumor neovascularization

  • Farber, Charles R.

    Systems Genetics of Skeletal Development and Maintenance

  • Garrett-Bakelman, Francine

    Acute Myeloid Leukemia: molecular and cellular biology events which mediate aberrant epigenetic and transcriptional mechanisms during disease establishment and progression

  • Grainger, Robert M.

    Molecular embryology--gene regulation in cells committed to specific developmental lineages

  • Guler, Jennifer

    Mechanisms of Genetic and Metabolic Adaptation in the Malaria Parasite, Plasmodium falciparum

  • Hirschi, Karen Kemper

    Understanding Cellular and Molecular Mechanisms Leading to Blood Vessel Formation

  • Li, Hui

    Gene regulation in cancer, RNA processing; Epigenetic modification; Stem cell and development

  • Loughran, Jr., Thomas P

    Hematologic malignancies; bone marrow disorders; leukemia; large granular lymphocyte (LGL)

  • Ma, Jianjie

    Physiology & Biophysics

  • Manichaikul, Ani W.

    Statistical Genetics, Genetic Epidemiology, Biostatistics, Network analysis

  • McNamara, Coleen A.

    Immune System Regulation of Cardiometabolic Disease

  • Miller, Clint L.

    Genetic variation, Complex diseases, Coronary artery disease, Genomics, Epigenomics, Regulatory mechanisms, Vascular biology, Pharmacology and Physiology

  • Minor, Wladek

    Structure-Function Relationships in Macromolecules; Infectious Diseases and Drug Discovery; Bioinformatics and Big Data; Scientific Reproducibility

  • Naegle, Kristen

    Regulation and function of tyrosine phosphorylation in complex networks

  • O’Rourke, Eyleen Jorgelina

    Obesity and Aging

  • Owens, Gary K.

    Identification of Factors and Mechanisms that Regulate the Stability of Late Stage Atherosclerotic Lesions and the Probability of Thromboembolic Events Including a Heart Attack or Stroke

  • Papin, Jason A.

    Systems biology, infectious disease, cancer, toxicology, metabolic engineering

  • Parichy, David

    Developmental Genetics, Evolution and Regeneration

  • Platig, John H

    Gene regulatory networks, Systems genetics, Multi-omic data integration, Network science

  • Ratan, Aakrosh

    Genomics, Molecular Evolution, Algorithm Design and Analysis

  • Rekosh, David M.

    Human Immunodeficiency Virus Gene Expression; Human Endogenous Viruses; SARS-CoV-2 Protein Trafficking; Post-transcriptional Gene Regulation

  • Rich, Stephen S.

    Genetic basis of common human disease, including type 1 diabetes, diabetic complications, ischemic stroke, atherosclerosis

  • Saucerman, Jeffrey J.

    Roles of complex signaling networks involved in the regulation of cardiovascular function and disease

  • Sheffield, Nathan

    computational biology & bioinformatics; high performance computing; epigenomics & chromatin; pediatric cancer; computational regulatory genomics; machine learning

  • Sheybani, Natasha

    Biomedical Engineering

  • Sheynkman, Gloria M.

    Proteoform Systems Biology: proteogenomic approaches to uncover the role of proteomic variation in human disease

  • Stukenberg, P. Todd

    Mechanisms of chromosome segregation in Mitosis and generation of Chromosomal Instability in tumors

  • Sun, Jie

    Viral immunology, T cells, Macrophages, Tissue repair

  • Swiatecka-Urban, Agnieszka

    Regulation of cell-surface stability and intracellular trafficking of membrane proteins in epithelial cells

  • Syed, Sana

    Understanding why a subset of children living in in low- and middle-income countries around the world develop growth and vaccine failure. Investigating the causes and progression of inflammatory enteropathies of the gastrointestinal lumen. Integrating data science-driven approaches with medicine to drive precision medicine.

  • Tang, Shangming

    Complex Genome Rearrangements

  • Trinh, Bon Q

    Understanding Protein and RNA regulations of gene expression via chromatin structure in myeloid cell development and diseases

  • Wang, Yuh-Hwa

    Genome instability in cancer and repeat expansion diseases

  • Woodfolk, Judith A.

    The immune response to common cold and allergens in health and disease.

  • Worley, Melanie I.

    Investigating regeneration through genetics and single-cell analysis

  • Zang, Chongzhi

    Bioinformatics methodology development; Epigenetics and chromatin biology; Transcriptional regulation; Cancer genomics and epigenomics; Statistical methods for biomedical data integration; Advanced machine learning; Theoretical and computational biophysic

  • Zhang, Tian

    Integrating high-throughput proteomic, chemical, genetic and computational tools for target identification and drug discovery in cancer biology

  • Zunder, Eli

    Single Cell Analysis